PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.BU4F4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 165aa    MW: 18731.4 Da    PI: 9.8274
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.BU4F4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.4e-0869114346
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                      +W++ + + + +a + + ++   +W  Iar +g g+t++++k ++  
      Aradu.BU4F4  69 SWSAKDNKAFERALAVYDKDtpdRWYNIARAVG-GKTPEDVKRHYER 114
                      7********************************.**********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.60865120IPR017884SANT domain
SMARTSM007174.8E-966118IPR001005SANT/Myb domain
SuperFamilySSF466891.33E-1268124IPR009057Homeodomain-like
PfamPF002494.4E-669114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-669116IPR009057Homeodomain-like
CDDcd001675.55E-676116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MPTSTTTPYK KEQPLPLSLP ISSHHPSKYL ILYCHSKIKT HTCLGLVSFI SLQEVNQLMA  60
SSSMQSSSSW SAKDNKAFER ALAVYDKDTP DRWYNIARAV GGKTPEDVKR HYERLVHDVR  120
HIESGQVPYP NYKKSGGREK PDAPFHSLIG IRNKEIQNLT IIQLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-3761152293RADIALIS
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2086800.0KF208680.1 Arachis hypogaea putative MYB-related protein 26 (MYB26) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ58FS38e-38RAD_ANTMA; Transcription factor RADIALIS
STRINGGLYMA02G18210.18e-39(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-31RAD-like 1